Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs11653443 chr17:168179 T/G 7.11E-6 111 15.17 23.37 3.07 KM Plot
LAML rs11654845 chr17:169399 C/T 7.11E-6 111 3.07 23.37 15.17 KM Plot
LAML rs11668251 chr19:48265804 A/C 1.05E-7 108 5.6 22.37 12.68 KM Plot
LAML rs11668386 chr19:19531910 A/G 9.2E-5 111 16.3 9.1 0 KM Plot
LAML rs11669516 chr19:19532682 G/A 0.000158 111 16.23 12.17 0 KM Plot
LAML rs11671367 chr19:48250714 G/T 6.49E-7 109 5.1 21.87 14.18 KM Plot
LAML rs116727615 chr5:25968443 C/A 0.000145 111 15.17 16.17 0 KM Plot
LAML rs11676632 chr2:3203745 C/T 0.000118 111 15.7 11.65 0 KM Plot
LAML rs11677483 chr2:19950416 G/A 2.21E-12 111 17.78 14.13 0 KM Plot
LAML rs116815494 chr10:78962404 G/A 7.34E-5 111 13.15 18.78 0 KM Plot
LAML rs11685364 chr2:174129592 G/A 0.000167 109 16.23 11.67 0 KM Plot
LAML rs11688438 chr2:3222016 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs116914614 chr16:16306192 G/T 0.000154 108 16.77 11.13 0 KM Plot
LAML rs11692747 chr2:19947788 C/G 2.21E-12 111 17.78 14.13 0 KM Plot
LAML rs117068160 chr7:19757519 G/T 0.000167 108 16.17 13.68 0 KM Plot